R-universe - flmnh-ai (AI at the Florida Museum of Natural History)

petrographer - Petrographic Thin Section Analysis with Deep Learning

Automated petrographic analysis of thin section images using deep learning models. Provides tools for training RF-DETR detection and segmentation models, running predictions with SAHI (Slicing Aided Hyper Inference), calculating morphological properties, and analyzing results. Supports both local and HPC training workflows with seamless R-Python integration via reticulate.

Last updated

quarto

5.10 score 4 stars 13 scripts

tidyeof - Tidy Empirical Orthogonal Functions and Spatial Downscaling

An R package for conducting empirical orthogonal function (EOF) analysis in the tidyverse framework. Functions to isolate modes of variability from spatiotemporal data, run various diagnostics, and use these patterns for spatial downscaling via canonical correlation analysis.

Last updated

quarto

3.48 score 2 stars 7 scripts

tidyvec - Lightweight Vector Embeddings for the Tidyverse

A lightweight vector database for storing and querying embeddings within the tidyverse framework. Supports multimodal (text and image) embeddings, nearest neighbor search, and visualization, all with a tidyverse-friendly API.

Last updated

2.70 score 1 stars 2 scripts

yersinia - Plague Transmission Models for Epidemiological Research

A toolkit for plague transmission modeling using stochastic compartmental models. Implements carcass-based transmission dynamics (Didelot et al. 2017) with spatial structure and multi-host dynamics for epidemiological research.

Last updated

cppopenmp

2.60 score 7 scripts

hipergator - HiPerGator SLURM Interface for R

Simple interface for submitting and managing SLURM jobs on the University of Florida HiPerGator cluster. Provides authentication, data transfer, job submission, monitoring, and result retrieval with configuration management for streamlined workflows.

Last updated

2.00 score 6 scripts