Package: yersinia
Title: Plague Transmission Models for Epidemiological Research
Version: 0.1.0
Authors@R: c(
    person("Nick", "Gauthier", , "nicolas.gauthier@ufl.edu", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-2225-5827")),
    person("Nich", "Martin", , "n.martin@ufl.edu", role = "aut",
           comment = c(ORCID = "0000-0001-9539-250X")))
Description: A toolkit for plague transmission modeling using
        stochastic compartmental models. Implements carcass-based
        transmission dynamics (Didelot et al. 2017) with spatial
        structure and multi-host dynamics for epidemiological research.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
URL: https://github.com/flmnh-ai/yersinia,
        https://flmnh-ai.github.io/yersinia/
BugReports: https://github.com/flmnh-ai/yersinia/issues
LinkingTo: cpp11, dust2, monty
Remotes: mrc-ide/odin2, mrc-ide/dust2, mrc-ide/monty
Depends: R (>= 4.1.0)
Imports: odin2, dust2, monty, dplyr, tidyr, tibble, yaml, rlang, purrr,
        checkmate, glue, cli, Matrix, withr
Suggests: testthat, ggplot2, knitr, rmarkdown, posterior, bayesplot,
        sf, igraph, patchwork, scales, R6, shiny, bslib, DT
Config/testthat/edition: 3
VignetteBuilder: knitr
LazyData: true
Config/pak/sysreqs: libicu-dev
Repository: https://flmnh-ai.r-universe.dev
Date/Publication: 2026-09-22 20:13:43 UTC
RemoteUrl: https://github.com/flmnh-ai/yersinia
RemoteRef: HEAD
RemoteSha: 8be6bf3bf15560884691b2d8e153a407ac71363e
NeedsCompilation: yes
Packaged: 2026-10-22 11:33:50 UTC; root
Author: Nick Gauthier [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2225-5827>),
  Nich Martin [aut] (ORCID: <https://orcid.org/0000-0001-9539-250X>)
Maintainer: Nick Gauthier <nicolas.gauthier@ufl.edu>