{
  "_id": "6a1f0b4db401979e7341c71c",
  "Package": "hipergator",
  "Title": "HiPerGator SLURM Interface for R",
  "Version": "0.1.0",
  "Authors@R": "c(\nperson(\"Nicolas\", \"Gauthier\", , \"nicolas.gauthier@ufl.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-2225-5827\")))",
  "Description": "Simple interface for submitting and managing SLURM jobs on\nthe University of Florida HiPerGator cluster. Provides\nauthentication, data transfer, job submission, monitoring, and\nresult retrieval with configuration management for streamlined\nworkflows.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "cmake make libuv1-dev",
  "Repository": "https://flmnh-ai.r-universe.dev",
  "Date/Publication": "2025-10-14 01:20:49 UTC",
  "RemoteUrl": "https://github.com/flmnh-ai/hipergator",
  "RemoteRef": "HEAD",
  "RemoteSha": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-17 09:53:26 UTC",
    "User": "root"
  },
  "Author": "Nicolas Gauthier [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-2225-5827>)",
  "Maintainer": "Nicolas Gauthier <nicolas.gauthier@ufl.edu>",
  "MD5sum": "c815f965c3e1462f3c7f99e306eec85f",
  "_user": "flmnh-ai",
  "_type": "src",
  "_file": "hipergator_0.1.0.tar.gz",
  "_fileid": "6bdbb75b14f6ed897376e95244301c63e7afd5c2eb392bb3e1634aefd042f38e",
  "_filesize": 558785,
  "_sha256": "6bdbb75b14f6ed897376e95244301c63e7afd5c2eb392bb3e1634aefd042f38e",
  "_created": "2026-05-17T09:53:26.000Z",
  "_published": "2026-06-02T16:56:45.521Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79126035065,
      "time": 112,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7041404641"
    },
    {
      "job": 79126035586,
      "time": 108,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7041404217"
    },
    {
      "job": 79126035447,
      "time": 65,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7041416824"
    },
    {
      "job": 79126035352,
      "time": 98,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7041419679"
    },
    {
      "job": 79126034066,
      "time": 164,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7041392305"
    },
    {
      "job": 79126034361,
      "time": 95,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7364392819"
    },
    {
      "job": 79126035129,
      "time": 69,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7041399726"
    },
    {
      "job": 79126035657,
      "time": 73,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7041400385"
    },
    {
      "job": 79126035691,
      "time": 75,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7041400373"
    }
  ],
  "_buildurl": "https://github.com/r-universe/flmnh-ai/actions/runs/25987563840",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/flmnh-ai/hipergator",
  "_commit": {
    "id": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
    "author": "Nick Gauthier <nicolas.gauthier@ufl.edu>",
    "committer": "Nick Gauthier <nicolas.gauthier@ufl.edu>",
    "message": "Add quiet mode and improve HiPerGator integration\n\nIntroduces a 'quiet' parameter to suppress status messages in key functions (hpg_authenticate, hpg_submit, hpg_upload, hpg_download, hpg_mkdir). Enhances SSH and rsync integration for HiPerGator, including automatic use of rsync.rc.ufl.edu for transfers, port guidance, and improved resource/time validation. Updates documentation with SSH configuration and workflow details, adds logo, and refactors job object to use environments for persistence. Also adds ensure_hpg_job_env helper and improves path/command validation for security.\n",
    "time": 1760404849
  },
  "_maintainer": {
    "name": "Nicolas Gauthier",
    "email": "nicolas.gauthier@ufl.edu",
    "login": "nick-gauthier",
    "twitter": "@nick_gaut",
    "description": "Assistant Curator, AI for Bio/Cultural Diversity",
    "uuid": 12808168,
    "orcid": "0000-0002-2225-5827"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "fs",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "processx",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "flmnh-ai",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-38",
      "n": 9
    },
    {
      "week": "2025-42",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "nick-gauthier",
      "count": 10,
      "uuid": 12808168
    }
  ],
  "_userbio": {
    "uuid": 116828111,
    "type": "organization",
    "name": "AI at the Florida Museum of Natural History",
    "description": "Code repository for the AI for Human Ecology Lab at the Florida Museum of Natural History, University of Florida"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/hipergator"
  },
  "_devurl": "https://github.com/flmnh-ai/hipergator",
  "_searchresults": 6,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/hipergator.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "ensure_hpg_job_env",
    "hpg_authenticate",
    "hpg_cancel",
    "hpg_check_connection",
    "hpg_cluster_config",
    "hpg_config",
    "hpg_configuration",
    "hpg_configure",
    "hpg_defaults",
    "hpg_disconnect",
    "hpg_download",
    "hpg_exists",
    "hpg_get_error",
    "hpg_gpu",
    "hpg_job_info",
    "hpg_mkdir",
    "hpg_reset_config",
    "hpg_reset_configuration",
    "hpg_resources",
    "hpg_show_base_dir",
    "hpg_show_config",
    "hpg_storage_config",
    "hpg_submit",
    "hpg_suggest_partitions",
    "hpg_upload",
    "hpg_wait"
  ],
  "_help": [
    {
      "page": "ensure_hpg_job_env",
      "title": "Check job status",
      "topics": [
        "ensure_hpg_job_env"
      ]
    },
    {
      "page": "hpg_authenticate",
      "title": "Authenticate with HiPerGator using SSH multiplexing",
      "topics": [
        "hpg_authenticate"
      ]
    },
    {
      "page": "hpg_cancel",
      "title": "Cancel a running job",
      "topics": [
        "hpg_cancel"
      ]
    },
    {
      "page": "hpg_check_connection",
      "title": "Check if SSH master connection is active",
      "topics": [
        "hpg_check_connection"
      ]
    },
    {
      "page": "hpg_cluster_config",
      "title": "Create cluster configuration",
      "topics": [
        "hpg_cluster_config"
      ]
    },
    {
      "page": "hpg_config",
      "title": "Get flattened HiPerGator configuration",
      "topics": [
        "hpg_config"
      ]
    },
    {
      "page": "hpg_configuration",
      "title": "Get current HiPerGator configuration",
      "topics": [
        "hpg_configuration"
      ]
    },
    {
      "page": "hpg_configure",
      "title": "Configure HiPerGator settings",
      "topics": [
        "hpg_configure"
      ]
    },
    {
      "page": "hpg_defaults",
      "title": "Create default settings configuration",
      "topics": [
        "hpg_defaults"
      ]
    },
    {
      "page": "hpg_disconnect",
      "title": "Disconnect SSH master connection",
      "topics": [
        "hpg_disconnect"
      ]
    },
    {
      "page": "hpg_download",
      "title": "Download files from HiPerGator",
      "topics": [
        "hpg_download"
      ]
    },
    {
      "page": "hpg_exists",
      "title": "Check if remote path exists",
      "topics": [
        "hpg_exists"
      ]
    },
    {
      "page": "hpg_get_error",
      "title": "Get job error information",
      "topics": [
        "hpg_get_error"
      ]
    },
    {
      "page": "hpg_gpu",
      "title": "Create GPU resource specification",
      "topics": [
        "hpg_gpu"
      ]
    },
    {
      "page": "hpg_job_info",
      "title": "Get detailed job information",
      "topics": [
        "hpg_job_info"
      ]
    },
    {
      "page": "hpg_mkdir",
      "title": "Create directories on HiPerGator",
      "topics": [
        "hpg_mkdir"
      ]
    },
    {
      "page": "hpg_reset_config",
      "title": "Reset HiPerGator configuration to defaults",
      "topics": [
        "hpg_reset_config"
      ]
    },
    {
      "page": "hpg_reset_configuration",
      "title": "Reset configuration to defaults",
      "topics": [
        "hpg_reset_configuration"
      ]
    },
    {
      "page": "hpg_resources",
      "title": "Create HiPerGator resource specification",
      "topics": [
        "hpg_resources"
      ]
    },
    {
      "page": "hpg_show_base_dir",
      "title": "Show current base directory and explain path resolution",
      "topics": [
        "hpg_show_base_dir"
      ]
    },
    {
      "page": "hpg_show_config",
      "title": "Show current configuration",
      "topics": [
        "hpg_show_config"
      ]
    },
    {
      "page": "hpg_storage_config",
      "title": "Create storage configuration",
      "topics": [
        "hpg_storage_config"
      ]
    },
    {
      "page": "hpg_submit",
      "title": "Submit a job to HiPerGator",
      "topics": [
        "hpg_submit"
      ]
    },
    {
      "page": "hpg_suggest_partitions",
      "title": "Get partition suggestions based on resources",
      "topics": [
        "hpg_suggest_partitions"
      ]
    },
    {
      "page": "hpg_upload",
      "title": "Upload files to HiPerGator",
      "topics": [
        "hpg_upload"
      ]
    },
    {
      "page": "hpg_wait",
      "title": "Wait for job completion",
      "topics": [
        "hpg_wait"
      ]
    },
    {
      "page": "print.hpg_job",
      "title": "Print method for 'hpg_job'",
      "topics": [
        "print.hpg_job"
      ]
    }
  ],
  "_pkglogo": "https://github.com/flmnh-ai/hipergator/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/flmnh-ai/hipergator/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "fs",
    "glue",
    "processx",
    "ps",
    "R6",
    "rlang"
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "hipergator",
  "_universes": [
    "flmnh-ai",
    "nick-gauthier"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-17T09:55:21.000Z",
      "distro": "noble",
      "commit": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
      "fileid": "1c60da879c5498555a06b307c6211225e2fabc8d41b5a34bde2c02b0325c24cb",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/flmnh-ai/actions/runs/25987563840"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-17T09:55:18.000Z",
      "distro": "noble",
      "commit": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
      "fileid": "07ec89b75b8c30bcfc03eba8e85985e77f7f6466b4ef5d063811e283f016ae0c",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/flmnh-ai/actions/runs/25987563840"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-17T09:57:19.000Z",
      "commit": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
      "fileid": "9dfe2dcd1c4f73b447f09fc4d6727152a4111743be43303d492ad8c28c125000",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/flmnh-ai/actions/runs/25987563840"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-17T09:57:41.000Z",
      "commit": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
      "fileid": "159a983444625255715f880ae0207ea38818dd95d723fc298edfa2e22da47bea",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/flmnh-ai/actions/runs/25987563840"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-17T09:54:25.000Z",
      "commit": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
      "fileid": "100456208378074416b5c18f8ba219c1a7ed36e0296087fbb5adf53fa4924ce3",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/flmnh-ai/actions/runs/25987563840"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-17T09:54:31.000Z",
      "commit": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
      "fileid": "6068de63a3bc98f2ada84656b33e4b149c45354ad2e6bde294f1dd6335bbcf18",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/flmnh-ai/actions/runs/25987563840"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-17T09:54:31.000Z",
      "commit": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
      "fileid": "842b4d304c05cb577b46ef2ae216203a62d8bdd1fa1a15c1183a0c01eb5a21b7",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/flmnh-ai/actions/runs/25987563840"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-06-02T16:56:24.000Z",
      "commit": "a2778f4170efb222b6d0a0a5ac065088ae613eb7",
      "fileid": "b3803e042ccf19a4851001d707277b270ee5988dc0f5ba4cb046bd9cd73852c3",
      "status": "success",
      "buildurl": "https://github.com/r-universe/flmnh-ai/actions/runs/25987563840"
    }
  ]
}